Accepted Papers

#3. Could Chemical LLMs benefit from Message Passing
Jiaqing Xie and Ziheng Chi

#4. Temporal Subspace Clustering for Molecular Dynamics Data [PDF]
Anna Beer, Martin Heinrigs, Claudia Plant and Ira Assent

#7. Distance-Preserving Generative Modeling of Spatial Transcriptomics [PDF]
Wenbin Zhou and Jin-Hong Du

#8. gFlora: a topology-aware method to discover functional co-response groups in soil microbial communities [PDF]
Nan Chen, Merlijn Schram and Doina Bucur

#9. Hybrid Deep Learning Framework for Enhanced Melanoma Detection [PDF]
Peng Zhang and Divya Chaudhary

#11. HervEVO: Accurate Classification and Generation of Human Endogenous Retroviruses with DNA Foundation Model [PDF]
Jieli Zhou, Duo Du, Hongyi Xin and Lei Liu

#12. Effectiveness of Cross-linguistic Extraction of Genetic Information using Generative Large Language Models [PDF]
Milindi Kodikara and Karin Verspoor

#14. Context-Aware Hierarchical Fusion for Drug Relational Learning [PDF]
Yijingxiu Lu, Yinhua Piao, Sangseon Lee and Sun Kim

#15. Mixture-of-Experts Approach for Enhanced Drug-Target Interaction Prediction and Confidence Assessment [PDF]
Yijingxiu Lu, Sangseon Lee, Soosung Kang and Sun Kim

#17. scGHSOM: Hierarchical clustering and visualization of single-cell and CRISPR data using growing hierarchical SOM [PDF]
Shang-Jung Wen, Jia-Ming Chang and Fang Yu

#20. A comprehensive evaluation of large Language models on benchmark biomedical text processing tasks [PDF]
Israt Jahan, Md Tahmid Rahman Laskar, Chun Peng and Jimmy Huang

#21. A novel approach for predicting breast cancer metastasis through measurement of global transcriptional dysregulation [PDF]
Tanzira Najnin, Sakhawat H. Saimon, Maryam Zand, Nahim Adnan, Zhijie Liu, Tim H. Huang and Jianhua Ruan

#22. Adapting Large Language Models to Predict Gene Interactions [PDF]
Mark Heimann, Christine Klymko and Jayaraman J. Thiagarajan

#23. ACR: A Benchmark for Automatic Cohort Retrieval [PDF]
Dung Ngoc Thai, Victor Ardulov, Jose Ulises Mena, Simran Tiwari, Gleb Erofeev, Ramy Eskander, Karim Tarabishy, Ravi B Parikh and Wael Salloum

#25. LayLLM: Adapting Large Language Models for Lay Summarization of Biomedical Literature and Clinical Reports [PDF]
Jieli Zhou and Hongyi Xin

#26. Pre-Trained Foundation Model Representations to Uncover Breathing Patterns in Speech [PDF]
Vikramjit Mitra, Anirban Chatterjee, Ke Zhai, Helen Weng, Ayuko Hill, Nicole Hay, Christopher Webb, Jamie Cheng and Erdrin Azemi